anthology-of-the-sota
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biomolecular-modeling
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11 items with this tag.
Oct 01, 2026
LIT-754: Efficient AlphaFold2 Training using Parallel Evoformer and Branch Parallelism
distributed-optimization
model-architecture
systems-optimization
biomolecular-modeling
Sep 25, 2026
LIT-679: Dynamic Chunking for End-to-End Hierarchical Sequence Modeling
representation-and-encoding
model-architecture
biomolecular-modeling
Sep 25, 2026
LIT-702: Simple and Effective Masked Diffusion Language Models
generative-modeling
training-optimization
inference-optimization
adaptation-and-tuning
biomolecular-modeling
Sep 23, 2026
LIT-583: Highly accurate protein structure prediction with AlphaFold
biomolecular-modeling
model-architecture
data-pipeline
Sep 23, 2026
LIT-584: Accurate structure prediction of biomolecular interactions with AlphaFold 3
biomolecular-modeling
generative-modeling
model-architecture
Sep 23, 2026
SOTA-352: When a structure predictor is made generative, add a regression model's predictions to the training data so disordered regions are learned as disorder rather than invented structure
generative-modeling
data-pipeline
biomolecular-modeling
Sep 23, 2026
SOTA-353: Train a head that predicts the model's own accuracy on each output, against the metric you care about, and use it to rank samples and filter predictions
analysis-and-evaluation
biomolecular-modeling
Sep 23, 2026
SOTA-354: When unlabelled inputs vastly outnumber labelled ones, retrain from scratch on the labelled data mixed with the model's own high-confidence predictions for unlabelled inputs, under augmentation that stops it copying them
data-pipeline
training-optimization
biomolecular-modeling
Sep 23, 2026
THEORY-084: AlphaFold 2 needs the sequence alignment to find a protein's coarse fold, not to refine it, so accuracy collapses below a minimum alignment depth and barely improves above it
biomolecular-modeling
analysis-and-evaluation
Sep 21, 2026
LIT-505: Biological structure and function emerge from scaling unsupervised learning to 250 million protein sequences
biomolecular-modeling
representation-and-encoding
adaptation-and-tuning
Sep 21, 2026
LIT-506: Interpretable RNA Foundation Model from Unannotated Data for Highly Accurate RNA Structure and Function Predictions
biomolecular-modeling
representation-and-encoding
adaptation-and-tuning
analysis-and-evaluation